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A Simulated Regression based algorithm for transcriptome quantification.

SimReg is a standalone tool that requires gcc 4.0 or greater, and runs on Linux.

It depends on:

1. Boost ( version 1.38 or higher,

2. CVXOPT: A Python Package for Convex Optimization:

3. TCLAP library:

Download SimReg from:

To run SimReg simply use the following command: $PWD/
(always use full path to

First you will need to compile all source files using the make command.

(The C++ source files have been compiled on Ubuntu server so the program may work as is. See README.txt, inside the testbech directory, for testing instructions )

Report any bugs/suggestions to