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By skumsp - Posted on 09 July 2014

Source code for combinatorial pooling project:

1) Core pooling project:

2) Maximum Likelihood k-Clustering of viral sequences:

3) KEC viral NGS data processing (used as an auxiliary library in the core pooling project):

The following external libraries are required:

1) Biojava (

2) Commons-math (

3) Commons-io (


Experimental pooling NGS data sets used for the framework testing are available here: