Accepted Papers

  • Jia-Xin Li, Jian-Yu Shi, Ke Gao and Siu Ming Yiu. Predicting Combinative Drug Pairs via Integrating Heterogeneous Features for both Known and New Drugs
  • Wei Leyi and Zou Quan. SkipCPP-Pred: Promising Prediction Method for Cell-Penetrating Peptides Using Adaptive k-skip-n-gram Features on a High-quality Dataset
  • Letu Qingge, Xiaowen Liu, Farong Zhong and Binhai Zhu. Filling a protein scaffold with a reference
  • Bonnie Kirkpatrick. Haplotype Inference for Pedigrees with Few Recombinations
  • Bin Xu, Jihong Guan, Yang Wang and Shuigeng Zhou. CPredictor2.0: Effectively Detecting Both Small and Large Complexes from Protein-Protein Interaction Networks
  • Valery Veresov and Alexander Davidovskii. Structural Insights into Antiapoptotic Activation of Bcl-2 and Bcl-xL Mediated by FKBP38 and tBid
  • Takuya Moriyama, Seiya Imoto, Rui Yamaguchi, Yuichi Shiraishi, Kenichi Chiba and Satoru Miyano. OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads
  • Xiaodong Yan, Min Li, Jianxin Wang, Fang-Xiang Wu and Yi Pan. VAliBS: a visual aligner for bisulfite sequences
  • Dinghua Li, Yukun Huang, Chi-Ming Leung, Ruibang Luo, Hing-Fung Ting and Tak-Wah Lam. MegaGTA: a sensitive and accurate metagenomic Gene-Targeted Assembler using iterative de Bruijn graphs
  • Hongda Bu, Yanglan Gan, Yang Wang, Jihong Guan and Shuigeng Zhou. EnhancerDBN: An Enhancer Prediction Method Based on Deep Belief Network
  • Roman Sergeev, Ivan Kavaliou, Andrei Gabrielian, Alex Rosenthal and Alexander Tuzikov. Methods for Genome-wide Analysis of MDR and XDR Tuberculosis from Belarus
  • Yu Geng, Zhongmeng Zhao, Xuanping Zhang, Wenke Wang, Xiao Xiao and Jiayin Wang. An improved burden-test pipeline for cancer sequencing data
  • Marc Legeay, Beatrice Duval and Jean-Pierre Renou. Differential functional analysis and change motifs in gene networks to explore the role of anti-sense transcription
  • Valentina Egorova, Halina Grushevskaya, Nina Krylova, Igor Lipnevich, Taisija Orekhovskaja, Boris Shulitski and Vladimir Krot. High-performance sensing of DNA hybridization on surface of self-organized MWCNT-arrays decorated by organometallic complexes
  • Aiju Hou, Xiangmiao Zeng, Zhipeng Cai and Dechang Xu. Modeling and Simulation of Specific Production of Trans10, cis12-Conjugated Linoleic Acid in the Biosyn-thetic Pathway
  • Yijia Zhang, Hongfei Lin, Zhihao Yang and Jian Wang. Dynamic protein complex identification in uncertain protein-protein interaction networks
  • Xiaoxiong Zheng, Zhanzhan Cheng, Yang Wang, Jihong Guan and Shuigeng Zhou. Predicting lncRNA-Protein Interactions Based on Protein-Protein Similarity Network Fusion
  • Thiago Lipinski-Paes, Michele Dos Santos Silva, José Fernando Ruggiero Bachega and Osmar Norberto de Souza. A Multiagent Ab Initio Protein Structure Prediction Tool for Novices and Experts
  • Ghada Badr and Haifa Al-Aqel. DCJ-RNA: Double Cut and Join for RNA Secondary Structures Using a Component-Based Representation
  • Emily Flynn and Ileana Streinu. Consistent visualization of multiple rigid domain decompositions of proteins
  • Alexey Markin and Oliver Eulenstein. Path-Difference Median Trees
  • Rahul Singh and Ryan Eshleman. Progression Reconstruction from Unsynchronized Biological Data using Cluster Spanning Trees
  • Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali and Raffaella Rizzi. FSG: Fast String Graph Construction for De Novo Assembly of reads data
  • Nina Luhmann, Annelyse Thévenin, Aida Ouangraoua, Roland Wittler and Cedric Chauve. The SCJ small parsimony problem for weighted gene adjacencies
  • Pawel Gorecki, Jarosław Paszek and Agnieszka Mykowiecka. Mean values of gene duplication and loss cost functions
  • Prapaporn Techa-Angkoon, Yanni Sun and Jikai Lei. Improve Short Read Homology Search using Paired-End Read Information
  • Vinaya Vijayan, Siu Ming Yiu and Liqing Zhang. Framework for integration of genome and exome data to improve the identification of somatic variants
  • Jiri Klema, Frantisek Malinka and Filip Zelezny. Semantic Biclustering: a New Way to Analyze and Interpret Gene Expression Data
  • Jia Wen, Andrew Quitadamo, Benika Hall and Xinghua Shi. Epistasis Analysis of microRNAs in Colon Cancer Using Empirical Bayesian Elastic Nets
  • Felix Kuehnl, Peter F. Stadler and Sebastian Will. Tractable Kinetics of RNA-Ligand Interaction
  • Colleen Bosworth, Sneha Grandhi, Meetha Gould and Thomas Laframboise. MitoDel: A Method to Detect and Quantify Mitochondrial DNA Deletions from Next-Generation Sequence Data
  • Sharma V. Thankachan, Sriram Chockalingam and Srinivas Aluru. An Efficient Algorithm for finding all pairs $k$-mismatch maximal common substrings
  • Min Ye, Gabriela Racz, Qijia Jiang, Xiuwei Zhang and Bernard Moret. NEMo: An Evolutionary Model with Modularity for PPI Networks
  • Michał Startek, Jakub Nogły, Dariusz Grzebelus and Anna Gambin. TRANScendence: transposable elements database and de-novo mining tool allows inferring TEs activity chronology
  • Michal Marczyk. Improved detection of 2D gel electrophoresis spots by using Gaussian mixture model
  • Lu Wang, Dongxiao Zhu, Yan Li and Ming Dong. Poisson-Markov Mixture Model and Parallel Algorithm for Binning Massive and Heterogenous DNA Sequencing Reads
  • Min Li, Xiaopei Chen, Jianxin Wang and Yi Pan. Identifying essential proteins by purifying protein interaction networks
  • Wei Peng, Wei Lan, Zeng Yu, Jianxin Wang and Yi Pan. Predicting MicroRNA-disease associations by random walking on multiple networks
  • Lingxi Zhou, Yu Lin, Bing Feng and Jijun Tang. Phylogeny Reconstruction from Whole-Genome Data using Variable Length Binary Encoding
  • Menglu Li, Angel C.Y. Mak, Ernest T. Lam, Pui-Yan Kwok, Kevin Y. Yip, Ting Fung Chan and Siu Ming Yiu. Towards a more accurate error model for BioNano optical maps
  • Andrey Zaika, Iakov Davydov, Mikhail Gelfand and Marc Robinson-Rechavi. Selectoscope: a modern web-app for positive selection analysis of genomic data.
  • Serghei Mangul, Harry Yang, Farhad Hormozdiari, Elizabeth Tseng, Alex Zelikovsky and Eleazar Eskin. HapIso : An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads