Utilities

• General utility functions
  • bioa.util.general.are_consistent
  • bioa.util.general.reconstruct_sequence
  • bioa.util.general.reconstruct_uniform_sequence
  • bioa.util.general.convert_networkx_to_read_graph
• Graph Utility Functions
  • bioa.util.graph.max_bandwidth
  • bioa.util.graph.graph_rank
• Matrix Utility Functions
  • bioa.util.matrix.matrix_rank
• Validation and metrics for reconstruction algorithms
  • bioa.util.validation.hamming_distance
  • bioa.util.validation.mean_diversity
  • bioa.util.validation.shannon_entropy
  • bioa.util.validation.jensen_shannon_divergence
  • bioa.util.validation.kullback_leibler_divergence
  • bioa.util.validation.root_mean_square_deviation
  • bioa.util.validation.sensitivity
  • bioa.util.validation.positive_predictive_value