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bioa.io.amplicon.find_amplicons_by_primers

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Input/Ouput Algorithms for Amplicons

I/O functions for amplicon-data.

Input/Output algorithms for bioa.Amplicons

find_amplicons_by_primers(reference, primers) Finds the amplicon starting and ending positions in the reference given the primers used for the experiments.
build_amplicons_from_file(filename, ...) Creates the Amplicons data structure from a file of reads.
build_uniform_amplicons_from_file(filename, ...) Creates the Amplicons data structure from a file of reads.
write_amplicons_to_fasta(filename, amplicons) Write amplicon sequences to file.