bioa.util.validation.hamming_distance
bioa.util.validation.shannon_entropy
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Estimate/Compute the mean overlap diversity.
amp1 : bioa.Amplicons
First amplicon set to use in estimation.
amp2 : bioa.Amplicons
Second amplicon set to use in estimation.
overlap : int
The amount that reads from amp1 overlap with reads in amp2.
sample_size : int
The amount to use in the sample for estimation.
mean_diversity : float
Mean overlap diversity value from the smaple.