bioa.Amplicons.__init__

Amplicons.__init__(reads, start_end_positions, align_start, align_stop)

Class to represent amplicon data.

Contains the reads along with the starting and ending positions of each amplicon, and the length of the reference genome covered by the amplicons.

Parameters :

reads : (str, int)

Tuple of the sequence and aligned starting position.

start_end_positions : list of (int, int)

List of (int, int) tuples indicating the starting and ending position for each amplicon.

align_start : int

Where the aligned reads begin in the reference.

align_stop : int

Where the aligned reads end in the reference.