Table Of Contents

Previous topic

bioa.PQueue.decrease_key

Next topic

bioa.FrequencyMatrix.__init__

This Page

Frequency Matrix

Overview

frequency_matrix()

Base FreqMatrix class.

Initialization and Usage

FrequencyMatrix.__init__(amplicons[, ...]) This will construct the frequency matrix based on the amplicons in the amplicons.
FrequencyMatrix.__iter__() Return an iterator over the matrix.
FrequencyMatrix.__len__() Return the column-width of the matrix
FrequencyMatrix.__getitem__(idx) Returns a column based on the index given.
FrequencyMatrix.shape The shape of the frequency matrix.
FrequencyMatrix.construct_normalized_freq_matrix(...) This will normalize the frequencies in our matrix.