| DecliquedAmpliconReadGraph.__init__(...[, ...]) | |
| DecliquedAmpliconReadGraph._get_frequency_pairs(graph) | |
| DecliquedAmpliconReadGraph._get_frequency_pairs(graph) | |
| DecliquedAmpliconReadGraph.get_read_nodes() | Get the reads in the decliqued read-graph |
| DecliquedAmpliconReadGraph.get_fork_nodes() | Get the forks in the decliqued read-graph |
| DecliquedAmpliconReadGraph.get_read_and_fork_nodes() | Get the reads and forks in the decliqued read-graph |
| DecliquedAmpliconReadGraph.split_fork(fork, ...) | Split a fork node into two seperate nodes: |
| DecliquedAmpliconReadGraph.split_edge(fork, ...) | Split a fork as well as the left and right nodes into new nodes with the given minmax. |
| DecliquedAmpliconReadGraph.read_frequency_correlation(graph) | Computes the correlation between the frequencies of the reads in this graph versus the frequences of the reads in the other graph. |
| DecliquedAmpliconReadGraph.read_frequency_squared_euclidean_distance(graph) | Computes the squared euclidean distance between the frequencies of the reads in this graph versus the frequences of the reads in the other graph. |