This is the documentation for BIOA, the Python library for viral population sequence analysis. Along with the library is VirA: a tool for viral sequence reconstruction and frequency estimation.
| [1] | Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion Mandoiu, Yury Khudyakov, and Alex Zelikovsky Reconstruction of Viral Population Structure from Next-Generation Sequencing Data Using Multicommodity Flows BMC Bioinformatics, (To appear) 2013. |
| [2] | Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion Mandoiu, and Alex Zelikovsky. Reconstructing Viral Quasispecies from NGS Amplicon Reads. In Silico Biology, Volume 11, 5. pp 237-249. 2012. |