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Assembly and haplotyping of intra-host viral populations from NGS reads

  • Download: VirA KEC
  • References:
    P. Skums, N. Mancuso, A. Artyomenko, B. Tork, I. Mandoiu, Y. Khudyakov and A. Zelikovsky, Reconstruction of Viral Population Structure from Next-Generation Sequencing Data Using Multicommodity Flows BMC Bioinformatics, 14(Suppl 9):S2
    N. Mancuso, B. Tork, P. Skums, L. Ganova-Raeva, I. Mandoiu and A. Zelikovsky, Reconstructing Viral Quasispecies from NGS Amplicon Reads In Silico Biol, 11(5):237-49
    P. Skums, Z. Dimitrova, D. S. Campo, G. Vaughan, L. Rossi, J. C. Forbi, J. Yokosawa, A. Zelikovsky and Y. Khudyakov, Efficient error correction for next-generation sequencing of viral amplicons BMC Bioinformatics, 13 (Suppl 10):S6