bioa.util.validation.root_mean_square_deviation

root_mean_square_deviation(real, predicted)

Root mean square deviation. If the sets do not completely overlap then RMSD is calculated over the intersection.

Parameters :

real : dict

A dictionary mapping quasispecies to frequencies.

predicted : dict

the calculated dictionary mapping quasispecies to frequencies.

Returns :

rmsd : float

The root mean square deviation