Base ReadGraph class. All more specific classes will inherit from this class. This is a base data structure for reads of sequences.
| ReadGraph.__init__() | |
| ReadGraph.get_node_read_len(node) | |
| ReadGraph.get_node_read(node) | |
| ReadGraph.set_node_read(node, read) | |
| ReadGraph.get_node_freq(node) | get_node_freq: returns the frequency of the |
| ReadGraph.set_node_freq(node, freq) | |
| ReadGraph.get_edge_freq(node1, node2) | |
| ReadGraph.set_edge_freq(node1, node2, freq) | |
| ReadGraph.get_node_position(node) | |
| ReadGraph.set_node_position(node, pos) | |
| ReadGraph.source | |
| ReadGraph.sink | |
| ReadGraph.is_fork(node) | |
| ReadGraph.get_forks() | |
| ReadGraph.successors(node) | |
| ReadGraph.successors_iter(node) | |
| ReadGraph.predecessors_iter(node) | |
| ReadGraph.predecessors(node) | |
| ReadGraph.add_node(node, read, freq, pos) | |
| ReadGraph.remove_node(node) | |
| ReadGraph.add_nodes_from(nodes) | |
| ReadGraph.remove_nodes_from(nodes) |