DecliquedAmpliconReadGraph.__init__(...[, ...]) |
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DecliquedAmpliconReadGraph._get_frequency_pairs(graph) |
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DecliquedAmpliconReadGraph._get_frequency_pairs(graph) |
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DecliquedAmpliconReadGraph.get_read_nodes() |
Get the reads in the decliqued read-graph |
DecliquedAmpliconReadGraph.get_fork_nodes() |
Get the forks in the decliqued read-graph |
DecliquedAmpliconReadGraph.get_read_and_fork_nodes() |
Get the reads and forks in the decliqued read-graph |
DecliquedAmpliconReadGraph.split_fork(fork, ...) |
Split a fork node into two seperate nodes: |
DecliquedAmpliconReadGraph.split_edge(fork, ...) |
Split a fork as well as the left and right nodes into new nodes with the given minmax. |
DecliquedAmpliconReadGraph.read_frequency_correlation(graph) |
Computes the correlation between the frequencies of the reads in this graph versus the frequences of the reads in the other graph. |
DecliquedAmpliconReadGraph.read_frequency_squared_euclidean_distance(graph) |
Computes the squared euclidean distance between the frequencies of the reads in this graph versus the frequences of the reads in the other graph. |