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Quasispecies Assembly and Reconstruction Algorithms
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.. automodule:: bioa.algorithms.reconstruction
.. autosummary::
    :toctree: generated/

Read Graph
----------
.. autosummary::
    :toctree: generated/

    max_bandwidth_strategy
    random_bandwidth_strategy
    max_frequency_strategy
    greedy_fork_resolution
    random_fork_resolution
    min_forest_fork_resolution
    least_squares_fork_balance
    min_unsplittable_flows_resolution

Frequency Matrix
----------------
.. autosummary::
    :toctree: generated/

    amplicon_frequency_matrix_strategy
    amplicon_frequency_matrix_strategy_from_graph
    update_freq_matrix_from_lp_output