.. bioa documentation master file, created by sphinx-quickstart on Wed Oct 12 15:38:38 2011. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. Welcome to VirA and BIOA's documentation! ==================================================== This is the documentation for BIOA, the Python library for viral population sequence analysis. Along with the library is VirA: a tool for viral sequence reconstruction and frequency estimation. .. toctree:: :maxdepth: 2 installation vira reference/index References ========== .. [1] Pavel Skums, Nicholas Mancuso, Alexander Artyomenko, Bassam Tork, Ion Mandoiu, Yury Khudyakov, and Alex Zelikovsky Reconstruction of Viral Population Structure from Next-Generation Sequencing Data Using Multicommodity Flows BMC Bioinformatics, (To appear) 2013. .. [2] Nicholas Mancuso, Bassam Tork, Pavel Skums, Lilia Ganova-Raeva, Ion Mandoiu, and Alex Zelikovsky. Reconstructing Viral Quasispecies from NGS Amplicon Reads. In Silico Biology, Volume 11, 5. pp 237-249. 2012. Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`