Accepted Papers
Track 1
- Letu Qingge, Killian Smith, Sean Jungst and Binhai Zhu. On Approaching the One-sided Exemplar Adjacency Number Problem
- Fang Jing, Shaowu Zhang, Zhen Cao and Shihua Zhang. An integrative framework for combing sequence and epigenomic data to predict transcription factor binding sites using deep learning
- Daniel W. Schultz and Bojian Xu. On $k$-mismatch Shortest Unique Substring Queries Using GPU
- Siyu Zhao, Ruiqing Zheng, Xiang Chen, Yaohang Li, Fang-Xiang Wu and Min Li. PBMarsNet: A multivariate adaptive regression splines based method to reconstruct Gene Regulatory Networks
- Tunazzina Islam, Desh Ranjan, Eleanor Young, Ming Xiao, Mohammad Zubair and Harold Riethman. REXTAL: Regional Extension of Assemblies Using Linked-Reads
- Zhen Zhang, Jianxin Wang, Junwei Luo, Juan Shang, Min Li, Fang-Xiang Wu and Yi Pan. Sprites2: detection of deletions based on an accurate alignment strategy
- Yue Zhao. An Extension of Deep Pathway Analysis: A Pathway Route Analysis Framework Incorporating Multi-dimensional Cancer Genomics Data
- Jingrong Zhang, Zihao Wang, Yu Chen and Fa Zhang. Memory-effcient and Stabilizing Management System and Parallel Methods for RELION using CUDA and MPI
- Xiaofeng Fu, Yiqun Xiao and Yang Yang. Prediction of type III secreted effectors based on word embedding for protein sequences
- Lei Deng, Zuojin Dong and Hui Liu. XPredRBR: Accurate and Fast Prediction of RNA-Binding Residues in Proteins Using eXtreme Gradient Boosting
- Qingfeng Chen, Canshang Deng, Jin Liu, Ruiqing Zheng, Jianxin Wang and Wei Lan. KSIBW: Predicting kinase-substrate interactions based on bi-random walk
- Krzysztof Gogolewski, Maciej Sykulski, Neo Christopher Chung and Anna Gambin. Truncated robust principal component analysis and noise reduction for single cell RNA-seq data
- Sagi Snir and Ben Yohay. Extending the Evolvability Model to the Prokaryotic World: Simulations and Results on Real Data
- Albert Ng, Adedayo Odesile and Dong Si. GPU Accelerated Ray Tracing for the Beta-Barrel Detection from Three-dimensional Cryo-EM Map
- Guangdi Liu, Yuan Xia, Chuanwei Yang and Le Zhang. The review of the major entropy methods and applications in biomedical signal research
- Kai Shi, Lin Gao and Bingbo Wang. Inferring Dysregulated Pathways of Driving Cancer Subtypes through Multi-omics Integration
- Suyun Huang and Xingming Zhao. Prediction of drug response with a topology based dual-layer network model
- Qiao Zhu, Jiawei Luo, Pingjian Ding and Qiu Xiao. GRTR: Drug-disease association prediction based on graph regularized transductive regression on heterogeneous network
- Jucheol Moon and Oliver Eulenstein. Cluster Matching Distance for Rooted Phylogenetic Trees
- Huiyu Li, Sheng-Jun Li, Junliang Shang, Jin-Xing Liu and Chun-Hou Zheng. An Improved Particle Swarm Optimization with Dynamic Scale-Free Network for Detecting Multi-Omics Features
- Sagi Snir. Bounds on Identification of Genome Evolution Pacemakers
- Marmar Moussa and Ion Mandoiu. Locality Sensitive Imputation for single-cell RNA-Seq data
Track 2
- Ximei Luo, Yuming Zhao, Fang Wang and Guohua Wang. Identification of methylation states of DNA regions for Illumina Methylation BeadChip
- Yuehui Wang, Maozu Guo, Yazhou Ren, Lianyin Jia and Guoxian Yu. Drug Repositioning based on Individual Bi-random Walks on a Heterogenous Network
- Cheng Yan, Jianxin Wang, Fang-Xiang Wu and Yi Pan. DDIGIP: Predicting drug-drug interactions based on Gaussian interaction profile kernels
- Benika Hall and Xinghua Shi. Identifying MicroRNA-Gene Networks Specific to Pathologic Stages in Colon Cancer
- Bingchen Yu, Meng Han, Liyuan Liu, Liquan Bai, Yan Huang and Yi Liang. Data-driven Approach for Understanding the Mild Cognitive Impairment
- Neo Christopher Chung, Błażej Miasojedow, Michał Startek and Anna Gambin. Jaccard/Tanimoto similarity test and estimation methods to evaluate species co-occurrences
- Pakeeza Akram and Li Liao. Predicting Comorbid Diseases with Geometric Embedding of Human Interactome
- Jianwei Lu, Yao Lu, Yusheng Ding, Qingyang Xiao, Linqing Liu, Qingpo Cai, Yunchuan Kong, Yun Bai and Tianwei Yu. Detecting Differential Consistency Genes and Network Modules
- Lihua Wang and Zhi-Ping Liu. Detecting diagnostic biomarkers of Alzheimer's disease by integrating gene expression data in six brain regions
- Sen Zhang, Ronald Cw Ma and Weichuan Yu. Region-Based Interaction Detection in Genome-Wide Case-Control Studies
- Fei Guo and Jijun Tang. A Novel Multi-Scale Local Sequence and Structural Representation for Identifying Protein-Protein Complexes
- Jinhong Shi, Yan Yan, Michael Horsch, Mathew Links, Longhai Li and Antony Kusalik. Deep Feature Selection with Application in Neisseria Gonorrhoeae Antimicrobial Resistance Study
- Gur Sevillya, Orit Adato and Sagi Snir. Detecting Horizontal Gene Transfer: A Probabilistic Approach
- Mi-Xiao Hou, Ying-Lian Gao, Jin-Xing Liu, Jun-Liang Shang, Rong Zhu and Sha-Sha Yuan. A New Method for Mining Information of Co-expression Network based on Multi-Cancers Integrated Data
- Xin Li and Yufeng Wu. Detecting Circular RNA from High-throughput Sequence Data with De Bruijn Graph
- Hui Ying, Wei Pi-Jing, Xia Junfeng and Zheng Chun-Hou. MECoRank: Cancer Driver Genes Discovery Simultaneously Evaluating the Impact of SNPs and Differential Expression on Transcriptional Networks
- Yuping Lu, Charles Phillips and Michael Langston. A Robustness Metric for Biological Data Clustering Algorithms
- Lingkai Tang, Yulian Ding and Fangxiang Wu. Joint SNMF method for nding modules of multiple brain networks
- Xia Cao, Jie Liu, Maozu Guo and Jun Wang. HiSSI: High-order SNP-SNP Interactions Detection based on Efficient Significant Pattern and Differential Evolution
- Hua Zhong and Mingzhou Song. Non-monotonic directional association test reveals high-quality putative cancer driver noncoding RNAs and biomarkers
- Hui Tang, Ying Tang, Luonan Chen and Tao Zeng. Revealing the tipping points during infant brain development for human and chimpanzee by analysis of gene expression data
- Junrong Song, Feng Wang, Wei Peng and Jianxin Wang. Identifying driver genes involving gene dyregulated expression, tissue-specic expression and gene-gene network
- Sheikh Jubair, Luis Rueda and Alioune Ngom. Identifying subtype specific network-biomarkers of breast cancer survivability
- Hongda Bu, Jiaqi Hao, Yanglan Gan, Jihong Guan and Shuigeng Zhou. DEEPSEN: a new method for super-enhancer prediction based on convolutional neural network
- Min Li, Li Tang, Fangxiang Wu and Yi Pan. CSA: a web service for the complete process of ChIP-Seq analysis
- Zhongjia Wu, Yufeng Wu and Jingyang Gao. InvBFM: Finding Genomic Inversions from High-throughput Sequence Data based on Feature Mining
- Yingbo Cui, Minxia Cheng, Jiaming Xu, Xiangke Liao and Shaoliang Peng. OffScan: a universal CRISPR off-target sites detection tool
- Yue Zhao, Stephanie Piekos, Tham Hoang and Dong-Guk Shin. A Framework using Topological Pathways for Deeper Analysis of Transcriptome Data
- Prapaporn Techa-Angkoon, Kevin Childs and Yanni Sun. GPRED-GC: a Gene PREDiction model accounting for 5'-3' GC gradient
- Liu Shuhui and Shang Xuequn. Hierarchical Similarity Network Fusion for Discovering Cancer Subtypes