/*
# Copyright 2007-2012
# Niko Beerenwinkel,
# Nicholas Eriksson,
# Moritz Gerstung,
# Lukas Geyrhofer,
# Kerensa McElroy
# Osvaldo Zagordi,
# ETH Zurich
# This file is part of ShoRAH.
# ShoRAH is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# ShoRAH is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with ShoRAH. If not, see .
*/
/******************************
b2w.c
Kerensa McElroy
UNSW, Sydney Australia
adapted from samtools/calDep.c
******************************/
#include
#include "sam.h"
#include "faidx.h"
#include