Program
November 12, 2011 |
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8:30-10:00 |
Session 1 |
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8:30-9:10 |
Yury Khudyakov, CDC (Keynote, Talk) |
"Uniting Trends in Molecular Epidemiology" |
9:10-9:35 |
Pavel Skums, David S. Campo, Zoya Dimitrova, |
"Modeling differential interferon resistance of HCV |
Gilberto Vaughan, Daryl T. Lau, Yury Khudyakov |
quasispecies" |
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9:35-10:00 |
James Lara, John E. Tavis, Maureen J. Donlin, |
"Host-specific HCV evolution and response |
William Lee, He-Jun Yuan, Brian Pearlman, Gilberto |
to the combined interferon and ribavirin therapy" |
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Vaughan, Joseph Forbi, Guo-liang Xia, Yury Khudyakov |
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10:00-10:20 |
Cofee break |
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10:20-12:25 |
Session 2 |
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10:20-11:10 |
Fiona Hyland, Life Technologies (Keynote, Talk)) |
Semiconductor sequencing; speed, simplicity and scalability with Ion Torrent sequencing |
11:10-11:35 |
Nicholas Mancuso, Bassam Tork, Ion Mandoiu, |
"Viral Quasispecies Reconstruction from |
Alex Zelikovsky, Pavel Skums |
Amplicon 454 Pyrosequencing Reads" |
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11:35-12:00 |
Austin Huang, Rami Kantor, Allison DeLong, |
"QColors: An Algorithm for Conservative Viral Quasispecies |
Leeann Schrier, Sorin Istrail |
Reconstruction from Short and Non-Contiguous Next |
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Generation Sequencing Reads" |
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12:00-12:25 |
Zoya Dimitrova, David S. Campo, Sumathi |
"Assessments of Intra- and Inter-Host Diversity |
Ramachandran, Gilberto Vaughan, Lilia Ganova-Raeva, |
of Hepatitis C Virus using Next Generation |
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Yulin Lin, Joseph Forbi, Guo-liang Xia, Pavel Skums, |
Sequencing and Mass Spectrometry" |
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Brian Pearlman, Christiane Honisch, Yury Khudyakov |
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12:25-1:30 |
Lunch |
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1:30-3:00 |
Session 3 |
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1:30-2:10 |
Sergei Kosakovsky Pond, UCSD (Keynote Talk) |
"Computational analysis of HIV-1 evolution and epidemiology" |
2:10-2:35 |
Yufeng Shen, Yee Him Cheung, Shuang Wang, |
"A parametric Bayesian method to test the association of rare |
Itsik Pe'er |
variants" |
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2:35-3:00 |
David S. Campo, Zoya Dimitrova, James Lara, |
"Network of coordinated substitutions in the Hepatitis B |
Mike Purdy, Hong Thai, Sumathi Ramachandran, |
Virus Polymerase" |
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Lilia Ganova-Raeva, Joseph Forbi, Chong-Gee Teo, |
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Yury Khudyakov |
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3:00-3:20 |
Cofee break |
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3:20-5:00 |
Session 4A |
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3:20-3:45 |
Serghei Mangul, Adrian Caciula, Ion Mandoiu, |
"RNA-Seq based discovery and reconstruction of un-annotated |
Alex Zelikovsky |
transcripts in partially annotated genomes" |
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3:45-4:10 |
Irina V Astrakhantseva, David S. Campo, Aufra Araujo, |
"Variation in Physicochemical Properties of the Hypervariable Region |
Chong-Gee Teo, Yury Khudyakov, Saleem Kamili |
1 During Acute and Chronic Stages of Hepatitis C Virus Infection" |
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4:10-4:35 |
James Lara, Yury Khudyakov |
"Modeling antigenic properties of the hepatitis C virus NS3 protein" |
4:35-5:00 |
Kristin Bennett, Cagri Ozcaglar, Janani Ranganathan, |
"Visualization of tuberculosis patient and Mycobacterium |
Srivatsan Raghavan, Jacob Katz, Dan Croft, |
tuberculosis complex genotype data via host-pathogen maps" |
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Bulent Yener, Amina Shabbeer |
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5:00-5:15 |
Break |
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5:15-6:30 |
Session 4B |
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5:15-5:40 |
Arthi Ramachandran, Mariann Micsinai, Itsik Pe'er |
"CONDEX: COpy Number Detection in EXome Sequences" |
5:40-6:05 |
Xiu-Feng Wan, Zhipeng Cai, Li-Ping Long, |
"Integration of genetic distance measurement and mixture model |
analysis in understanding evolutionary dynamics" |
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6:05-6:30 |
Ion Mandoiu, UConn (Invited Talk) |
"Reconstruction of infectious bronchitis virus quasispecies from |
shotgun 454 pyrosequencing reads" |